DNA Conjugates and Sensors
Applications of nucleic acids have developed recently to provide solutions for biosensors, diagnostic tools and as platforms for the assembly of complex structures. These developments have been possible as their base sequence can be used to assemble precise structures following simple and predictable rules. Self-assembled DNA can then be amplified using polymerase chain reaction (PCR) and this ultimately enables the preparation of synthetic nucleic acids. Their use as molecular tools or DNA-conjugates has recently been enhanced by the addition of other groups including enzymes, fluorophores and small molecules. Written by leaders in the field, this volume describes the preparation and application of these DNA-conjugates. Several have been used as sensors (aptamers, riboswitches and nanostructures) based on the ability of nucleic acids to adopt specific structures in the presence of ligands, whilst others link reporter groups such as proteins or fluorophores to RNA or DNA for detection, single molecule studies, and increasing the sensitivity of PCR. The book is relevant to researchers in areas related to analytical chemistry, chemical biology, medicinal chemistry, molecular pharmacology, and structural and molecular biology.
DNA Conjugates and Sensors, The Royal Society of Chemistry, 2012.
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CHAPTER 1: Fluorophore-functionalised Locked Nucleic Acids (LNAs)p1-33ByPatrick J. Hrdlicka;Patrick J. HrdlickaDepartment of ChemistryUniversity of IdahoP.O. Box 442343, Moscow, ID 83844-2343USA[email protected]Search for other works by this author on:Michael E. ØstergaardMichael E. ØstergaardDepartment of Medicinal Chemistry, Isis Pharmaceuticals2855 Gazelle Court, Carlsbad, CA 92010USASearch for other works by this author on:
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CHAPTER 2: Fluorophore Conjugates for Single Molecule Workp34-74ByDavid KlenermanDavid KlenermanSearch for other works by this author on:
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CHAPTER 3: Small Molecule–Oligonucleotide Conjugatesp75-102ByDavid A. Rusling;David A. RuslingCentre for Biological SciencesLife Sciences Building 85, University of Southampton, Highfield, Southampton SO17 1BJUK[email protected]Search for other works by this author on:Keith R. FoxKeith R. FoxCentre for Biological SciencesLife Sciences Building 85, University of Southampton, Highfield, Southampton SO17 1BJUK[email protected]Search for other works by this author on:
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CHAPTER 4: Small Molecule–RNA Conjugatesp103-118BySanjukta Muhuri;Sanjukta MuhuriDepartment of ChemistryBarasat Government CollegeWest Bengal − 700124IndiaSearch for other works by this author on:Gopal Gunanathan Jayaraj;Gopal Gunanathan JayarajInstitute of Genomics and Integrative Biology(CSIR-IGIB), CSIR, Delhi − 110007IndiaSearch for other works by this author on:Souvik MaitiSouvik MaitiInstitute of Genomics and Integrative Biology(CSIR-IGIB), CSIR, Delhi − 110007IndiaSearch for other works by this author on:
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CHAPTER 5: Click Chemistry – a Versatile Method for Nucleic Acid Labelling, Cyclisation and Ligationp119-139ByAfaf H. El-Sagheer;Afaf H. El-SagheerChemistry BranchDept. of Science and MathematicsFaculty of Petroleum and Mining Engineering, Suez Canal University, Suez, 43721EgyptSearch for other works by this author on:Tom BrownTom BrownSearch for other works by this author on:
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CHAPTER 6: Therapeutic Applications of Nucleic Acid Aptamer Conjugatesp140-165ByPeter G. StockleyPeter G. StockleySearch for other works by this author on:
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CHAPTER 7: pH Sensitive DNA Devicesp166-189BySonali Saha;Sonali SahaNational Centre for Biological SciencesTIFR, GKVK, Bellary Road, Bangalore 560065India[email protected]Search for other works by this author on:Yamuna Krishnan*Yamuna Krishnan*National Centre for Biological SciencesTIFR, GKVK, Bellary Road, Bangalore 560065India[email protected]Search for other works by this author on:
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CHAPTER 8: Making Sense of Catalysis: The Potential of DNAzymes as Biosensorsp190-210BySimon A. McManus;Simon A. McManusDepartment of Biochemistry and Biomedical Sciences and Department of Chemistry and Chemical BiologyMcMaster University1280 Main Street West, Hamilton, OntarioCanada L8S 4K1[email protected]Search for other works by this author on:Kha Tram;Kha TramDepartment of Biochemistry and Biomedical Sciences and Department of Chemistry and Chemical BiologyMcMaster University1280 Main Street West, Hamilton, OntarioCanada L8S 4K1[email protected]Search for other works by this author on:Yingfu Li*Yingfu Li*Department of Biochemistry and Biomedical Sciences and Department of Chemistry and Chemical BiologyMcMaster University1280 Main Street West, Hamilton, OntarioCanada L8S 4K1[email protected]Search for other works by this author on:
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CHAPTER 9: Electrochemical Techniques as Powerful Readout Methods for Aptamer-based Biosensorsp211-241ByBingling Li;Bingling LiInstitute for Cellular and Molecular BiologyCenter for Systems and Synthetic Biology, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, TX 78712USA[email protected]Search for other works by this author on:Andrew D. Ellington*Andrew D. Ellington*Institute for Cellular and Molecular BiologyCenter for Systems and Synthetic Biology, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, TX 78712USA[email protected]Search for other works by this author on:
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CHAPTER 10: Oligonucleotide Conjugates for Detection of Specific Nucleic Acid Sequencesp242-257ByHiromu Kashida;Hiromu KashidaGraduate School of EngineeringNagoya UniversityFuro-cho, Chikusa-ku, Nagoya 464-8603Japan[email protected]Search for other works by this author on:Hiroyuki Asanuma*Hiroyuki Asanuma*Graduate School of EngineeringNagoya UniversityFuro-cho, Chikusa-ku, Nagoya 464-8603Japan[email protected]Search for other works by this author on:
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CHAPTER 11: Nucleic Acid–Nanoparticle Conjugate Sensors for Use with Surface Enhanced Resonance Raman Scattering (SERRS)p258-277ByNatalie Clark;Natalie ClarkCentre for Molecular Nanometrology, Department of Pure and Applied ChemistryUniversity of Strathclyde295 Cathedral Street, Glasgow G1 1XLUK[email protected]Search for other works by this author on:Karen Faulds;Karen FauldsCentre for Molecular Nanometrology, Department of Pure and Applied ChemistryUniversity of Strathclyde295 Cathedral Street, Glasgow G1 1XLUK[email protected]Search for other works by this author on:Duncan GrahamDuncan GrahamCentre for Molecular Nanometrology, Department of Pure and Applied ChemistryUniversity of Strathclyde295 Cathedral Street, Glasgow G1 1XLUK[email protected]Search for other works by this author on:
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CHAPTER 12: Covalent and Non-covalent Conjugates of Oligonucleotides as Artificial Restriction DNA Cuttersp278-295ByMakoto Komiyama;Makoto KomiyamaLife Science Center of Tsukuba Advanced Research AllianceUniversity of TsukubaTen-noudai 1-1-1, Tsukuba, Ibaraki 305-8577Japan[email protected]Search for other works by this author on:Yan Xu;Yan XuDivision of Chemistry, Department of Medical Sciences, Faculty of MedicineUniversity of Miyazaki5200 Kihara, Kiyotake, Miyazaki 889-1692JapanSearch for other works by this author on:Jun SumaokaJun SumaokaLife Science Center of Tsukuba Advanced Research AllianceUniversity of TsukubaTen-noudai 1-1-1, Tsukuba, Ibaraki 305-8577Japan[email protected]Search for other works by this author on:
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