Biophysical Approaches Determining Ligand Binding to Biomolecular Targets: Detection, Measurement and Modelling
The binding of small ligands to biological molecules is central to most aspects of biological function. The past twenty years has seen the development of an increasing armoury of biophysical methods that not only detect such binding, but also provide varying degrees of information about the kinetics, thermodynamics and structural aspects of the process. These methods have received increasing attention with the growth in more rational approaches to drug discovery and design. This book reviews the latest advances in the application of biophysics to the study of ligand binding. It provides a complete overview of current techniques to identify ligands, characterise their binding sites and understand their binding mechanisms. Particular emphasis is given to the combined use of different techniques and their relative strengths and weaknesses. Consistency in the way each technique is described makes it easy for readers to select the most suitable protocol for their research. The introduction explains why some techniques are more suitable than others and emphasizes the possible synergies between them. The following chapters, all written by a specialist in the particular technique, focus on each method individually. The book finishes by describing how several complimentary techniques can be used together for maximum effectiveness. This book is suitable for biomolecular scientists at graduate or post-doctoral level in academia and industry. Biologists and chemists will also find it a useful introduction to the techniques available.
Biophysical Approaches Determining Ligand Binding to Biomolecular Targets: Detection, Measurement and Modelling, The Royal Society of Chemistry, 2011.
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Introduction: The Who, Where, Why Questionsp1-14ByAnnick Dejaegere;Annick DejaegereInstitut de Génétique et de Biologie Moléculaire et Cellulaire1, rue Laurent FriesBP 10142, 67404Illkirch CedexFranceSearch for other works by this author on:Bruno Kieffer;Bruno KiefferInstitut de Génétique et de Biologie Moléculaire et Cellulaire1, rue Laurent FriesBP 10142, 67404Illkirch CedexFranceSearch for other works by this author on:Alberto PodjarnyAlberto PodjarnyInstitut de Génétique et de Biologie Moléculaire et Cellulaire1, rue Laurent FriesBP 10142, 67404Illkirch CedexFranceSearch for other works by this author on:
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Chapter 2: Nuclear Magnetic Resonance of Ligand Binding to Proteinsp15-55ByB. Kieffer;B. KiefferInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), CNRS UMR 7104INSERM U 964, Université de StrasbourgBP 10142-67404Illkirch CedexFranceSearch for other works by this author on:S. Homans;S. HomansAstbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of LeedsLS2 9JTUKSearch for other works by this author on:W. JahnkeW. JahnkeNovartis Institutes for Biomedical Research, Center for Proteomic ChemistryNovartis Campus 4002BaselSwitzerlandSearch for other works by this author on:
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Chapter 3: Ligand Binding: The Crystallographic Approachp56-135ByJean-Michel Rondeau,;Jean-Michel Rondeau,Novartis Institutes for BioMedical ResearchWSJ-088.8.08ACH-4056 BaselSwitzerlandSearch for other works by this author on:Gerhard Klebe;Gerhard KlebeInstitut für Pharmazeutische ChemieMarbacher Weg6,35032MarburgGermanySearch for other works by this author on:Alberto PodjarnyAlberto PodjarnyInstitut de Génétique et de Biologie Moléculaire et Cellulaire1, Rue Laurent FriesBP 10142, 67404Illkirch CedexFranceSearch for other works by this author on:
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Chapter 4: Surface Plasmon Resonancep136-155ByStefan LöfÅs;Stefan LöfÅsGE-Healthcare Bio-sciences ABRapsgatan 30, SE-751 84 UppsalaSwedenSearch for other works by this author on:Laurence Choulier;Laurence ChoulierBiosensor Group, CNRS-University of StrasbourgESBS, Parc d'Innovation Bld S. BrantBP 10413, 67412IllkirchFranceSearch for other works by this author on:Gabrielle Zeder-Lutz;Gabrielle Zeder-LutzBiosensor Group, CNRS-University of StrasbourgESBS, Parc d'Innovation Bld S. BrantBP 10413, 67412IllkirchFranceSearch for other works by this author on:Mireille Baltzinger;Mireille BaltzingerBiosensor Group, CNRS-University of StrasbourgESBS, Parc d'Innovation Bld S. BrantBP 10413, 67412IllkirchFranceSearch for other works by this author on:Danièle AltschuhDanièle AltschuhBiosensor Group, CNRS-University of StrasbourgESBS, Parc d'Innovation Bld S. BrantBP 10413, 67412IllkirchFranceSearch for other works by this author on:
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Chapter 5: Fluorescence Techniques to Characterise Ligand Binding to Proteinsp156-199ByPascal Didier;Pascal DidierLaboratoire de Biophotonique et Pharmacologie, UMR 7213 CNRS, Université de StrasbourgFaculté de Pharmacie, 74, Route du Rhin67401Illkirch CedexFranceSearch for other works by this author on:Kamal Kant Sharma;Kamal Kant SharmaLaboratoire de Biophotonique et Pharmacologie, UMR 7213 CNRS, Université de StrasbourgFaculté de Pharmacie, 74, Route du Rhin67401Illkirch CedexFranceSearch for other works by this author on:Yves MélyYves MélyLaboratoire de Biophotonique et Pharmacologie, UMR 7213 CNRS, Université de StrasbourgFaculté de Pharmacie, 74, Route du Rhin67401Illkirch CedexFranceSearch for other works by this author on:
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Chapter 6: Native Electrospray Ionisation Mass Spectrometry for the Characterisation of Protein/Ligand Systemsp200-225ByS. Sanglier-Cianférani;S. Sanglier-CianféraniLaboratoire de Spectrométrie de Masse BioOrganique, Institut Pluridisciplinaire Hubert Curien IPHC, CNRS UMR 7178, Université de Strasbourg UdS, ECPM25 Rue Becquerel67087StrasbourgFranceSearch for other works by this author on:C. Atmanene;C. AtmaneneLaboratoire de Spectrométrie de Masse BioOrganique, Institut Pluridisciplinaire Hubert Curien IPHC, CNRS UMR 7178, Université de Strasbourg UdS, ECPM25 Rue Becquerel67087StrasbourgFranceNovAliX Structural Biology, Bioparc, Boulevard Sebastien Brant67400IllkirchFranceSearch for other works by this author on:V. Vivat Hannah;V. Vivat HannahNovAliX Structural Biology, Bioparc, Boulevard Sebastien Brant67400IllkirchFranceSearch for other works by this author on:A. Van DorsselaerA. Van DorsselaerLaboratoire de Spectrométrie de Masse BioOrganique, Institut Pluridisciplinaire Hubert Curien IPHC, CNRS UMR 7178, Université de Strasbourg UdS, ECPM25 Rue Becquerel67087StrasbourgFranceSearch for other works by this author on:
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Chapter 7: Circular Dichroismp226-246ByStephen R. Martin;Stephen R. MartinDivision of Physical Biochemistry, MRC National Institute for Medical ResearchThe Ridgeway, Mill HillLondonNW7 1AAUKSearch for other works by this author on:Maria J. Schilstra;Maria J. SchilstraBiocomputation Research Group, Science & Technology Research Institute, University of HertfordshireCollege LaneHatfieldAL10 9ABUKSearch for other works by this author on:Giuliano SiligardiGiuliano SiligardiDiamond Light SourceDiamond House, Chilton, DidcotOxfordshireOX11 0DEUKSearch for other works by this author on:
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Chapter 8: Protein Thermal Denaturation Measurements via a Fluorescent Dyep247-274ByPiotras Cimmperman;Piotras CimmpermanLaboratory of Biothermodynamics and Drug Design, Institute of BiotechnologyGraičiūno 8LT-02241VilniusLithuaniaBaltic Institute of Advanced TechnologyVilniusLithuaniaSearch for other works by this author on:Daumantas MatulisDaumantas MatulisLaboratory of Biothermodynamics and Drug Design, Institute of BiotechnologyGraičiūno 8LT-02241VilniusLithuaniaSearch for other works by this author on:
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Chapter 9: Characterisation of Ligand Binding by Calorimetryp275-299ByErnesto Freire;Ernesto FreireDepartment of Biology, The Johns Hopkins University3400 N. Charles StreetBaltimoreMD 21218USASearch for other works by this author on:Yuko Kawasaki;Yuko KawasakiDepartment of Biology, The Johns Hopkins University3400 N. Charles StreetBaltimoreMD 21218USASearch for other works by this author on:Adrian Velazquez-Campoy;Adrian Velazquez-CampoyInstitute of Biocomputation and Physics of Complex Systems (BIFI), Universidad de ZaragozaZaragozaSpain,and Fundacion ARAID, Diputacion General de AragonZaragozaSpainSearch for other works by this author on:Arne SchönArne SchönDepartment of Biology, The Johns Hopkins University3400 N. Charles StreetBaltimoreMD 21218USASearch for other works by this author on:
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Chapter 10: Molecular Modelling of Ligand–Macromolecule Complexesp300-346ByE. Kellenberger;E. KellenbergerStructural Chemogenomics Group, Therapeutic Innovation Lab, UMR 7200 UdS-CNRS Faculté de Pharmacie74 Route du RhinBP 60024, F-67401Illkirch CedexFranceSearch for other works by this author on:A. DejaegereA. DejaegereBiocomputing Group, Structural Biology & Genomics Dept, IGBMC UMR 7104 Université de Strasbourg1 Rue Laurent FriesBP 10142, F-67404Illkirch CedexFranceSearch for other works by this author on:
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