In Silico Toxicology
In Silico methods to predict toxicity have become increasingly important recently, particularly in light of European legislation such as REACH and the Cosmetics Regulation. They are also being used extensively worldwide e.g. in the USA, Canada, Japan and Australia. In assessing the risk that a chemical may pose to human health or to the environment, focus is now being directed towards exploitation of in silico methods to replace in vivo or in vitro techniques. A prediction of potential toxicity requires several stages: 1) Collation and organisation of data available for the compound, or if this is not available, information for related compounds. 2) An assessment of the quality of the data. 3) Generation of additional information about the compound using computational techniques at various levels of complexity - calculation of physico-chemical properties, 2-D, 3-D / MO descriptors and specific receptor modelling / interaction. 4) Use of an appropriate strategy to predict toxicity - ie a statistically valid method which makes best use of all available information (mechanism of action, activity for related compounds, extrapolation across species and endpoints, likely exposure scenario amounts over time etc). 5) Consideration then needs to be given to how this information is used in the real world ie use of expert systems / tools as relevant to assessors (if sufficiently different to previous) - weight of evidence approaches. 6) Finally evidence should be presented from case studies within this area. No other publication brings together information on all of these areas in one book and this publication is unique in that it provides a logical progression through every one of these key stages and defines the use of computational approaches to predict the environmental toxicity and human health effects of organic chemicals. The volume is aimed at the developers and users of in silico toxicology and provides an analysis of all aspects required for in silico prediction of toxicology, including data collation, quality assessment and computational approaches. The contributions from recognised leaders in each of these areas include evidence of the use and applicability of approaches using real world case studies concerning both environmental and human health effects. The book provides a very useful single source reference for people working in this area including academics, professionals, under- and post-graduate students as well as Governmental Regulatory Scientists involved in chemical risk assessment and REACH.
O. Mekenyan, In Silico Toxicology, The Royal Society of Chemistry, 2010.
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In Silico Toxicology—An Introductionp1-10ByM. T. D. Cronin;M. T. D. CroninSchool of Pharmacy and ChemistryLiverpool John Moores University, Byrom Street, Liverpool L3 3AFUKSearch for other works by this author on:J. C. MaddenJ. C. MaddenSchool of Pharmacy and ChemistryLiverpool John Moores University, Byrom Street, Liverpool L3 3AFUKSearch for other works by this author on:
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Chapter 2: Introduction to QSAR and Other In Silico Methods to Predict Toxicityp11-30ByJ. C. MaddenJ. C. MaddenSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom Street, Liverpool L3 3AFUKSearch for other works by this author on:
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Chapter 3: Finding the Data to Develop and Evaluate (Q)SARs and Populate Categories for Toxicity Predictionp31-58ByM. T. D. CroninM. T. D. CroninSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom StreetLiverpool L3 3AFUKSearch for other works by this author on:
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Chapter 4: Data Quality Assessment for In Silico Methods: A Survey of Approaches and Needsp59-117ByM. Nendza;M. NendzaAnalytisches LaboratoriumLuhnstedtGermanySearch for other works by this author on:R. Benigni;R. BenigniEnvironment and Health Department, Istituto Superiore di SanitaRomeItalySearch for other works by this author on:M.T.D. Cronin;M.T.D. CroninSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityLiverpoolUKSearch for other works by this author on:S. Escher;S. EscherSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityLiverpoolUKSearch for other works by this author on:M. Hewitt;M. HewittSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityLiverpoolUKSearch for other works by this author on:M. Hrovat;M. HrovatInstitute of Public Health of the Republic of SloveniaSearch for other works by this author on:S. Jeram;S. JeramInstitute of Public Health of the Republic of SloveniaSearch for other works by this author on:J. C. Madden;J. C. MaddenSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityLiverpoolUKSearch for other works by this author on:T. VermeireT. VermeireRIVMBilthovenThe NetherlandsSearch for other works by this author on:
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Chapter 5: Calculation of Physico-Chemical and Environmental Fate Propertiesp118-147ByT. H. Webb;T. H. WebbSRC, Inc.2451 Crystal DriveSuite 804ArlingtonVirginia 22202USASearch for other works by this author on:L. A. MorlacciL. A. MorlacciSRC, Inc.2451 Crystal DriveSuite 804ArlingtonVirginia 22202USASearch for other works by this author on:
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Chapter 6: Molecular Descriptors from Two-Dimensional Chemical Structurep148-192ByU. Maran;U. MaranInstitute of Chemistry, University of TartuRavila 14ATartu 50411EstoniaSearch for other works by this author on:S. Sild;S. SildInstitute of Chemistry, University of TartuRavila 14ATartu 50411EstoniaSearch for other works by this author on:I. Tulp;I. TulpInstitute of Chemistry, University of TartuRavila 14ATartu 50411EstoniaSearch for other works by this author on:K. Takkis;K. TakkisInstitute of Chemistry, University of TartuRavila 14ATartu 50411EstoniaSearch for other works by this author on:M. MoosusM. MoosusInstitute of Chemistry, University of TartuRavila 14ATartu 50411EstoniaSearch for other works by this author on:
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Chapter 7: The Use of Frontier Molecular Orbital Calculations in Predictive Reactive Toxicologyp193-209ByS. J. EnochS. J. EnochSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityLiverpool L3 3AFUKSearch for other works by this author on:
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Chapter 8: Three-Dimensional Molecular Modelling of Receptor-Based Mechanisms in Toxicologyp210-227ByJ. C. Madden;J. C. MaddenSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom StreetLiverpool L3 3AFUKSearch for other works by this author on:M. T. D. CroninM. T. D. CroninSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom StreetLiverpool L3 3AFUKSearch for other works by this author on:
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Chapter 9: Statistical Methods for Continuous Measured Endpoints in In Silico Toxicologyp228-251ByP. H. RoweP. H. RoweSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom StreetLiverpool L3 3AFUKSearch for other works by this author on:
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Chapter 10: Statistical Methods for Categorised Endpoints in In Silico Toxicologyp252-274ByP. H. RoweP. H. RoweSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom Street, LiverpoolL3 3AFUKSearch for other works by this author on:
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Chapter 11: Characterisation, Evaluation and Possible Validation of In Silico Models for Toxicity: Determining if a Prediction is Validp275-300ByM. T. D. CroninM. T. D. CroninSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom StreetLiverpool L3 3AFUKSearch for other works by this author on:
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Chapter 12: Developing the Applicability Domain of In Silico Models: Relevance, Importance and Methodsp301-333ByM. Hewitt;M. HewittSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom Street, Liverpool L3 3AFUKSearch for other works by this author on:C. M. EllisonC. M. EllisonSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom Street, Liverpool L3 3AFUKSearch for other works by this author on:
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Chapter 13: Mechanisms of Toxic Action in In Silico Toxicologyp334-345ByD. W. RobertsD. W. RobertsSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom Street, Liverpool L3 3AFUKSearch for other works by this author on:
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Chapter 14: Adverse Outcome Pathways: A Way of Linking Chemical Structure to In Vivo Toxicological Hazardsp346-371ByT. W. SchultzT. W. SchultzThe University of Tennessee, College of Veterinary Medicine, Department of Comparative Medicine2407 River DriveKnoxvilleTN 37996-4543USASearch for other works by this author on:
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Chapter 15: An Introduction to Read-Across for the Prediction of the Effects of Chemicalsp372-384ByS. Dimitrov;S. DimitrovLaboratory of Mathematical Chemistry, Bourgas Prof. Assen Zlatarov UniversityYakimov St18010 BourgasBulgariaSearch for other works by this author on:O. MekenyanO. MekenyanLaboratory of Mathematical Chemistry, Bourgas Prof. Assen Zlatarov UniversityYakimov St18010 BourgasBulgariaSearch for other works by this author on:
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Chapter 16: Tools for Category Formation and Read-Across: Overview of the OECD (Q)SAR Application Toolboxp385-407ByR. DiderichsR. DiderichsOrganisation for Economic Co-operation and Development (OECD)ENV/EHS2 rue André Pascal75775 PARIS CEDEX 16FranceSearch for other works by this author on:
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Chapter 17: Open Source Tools for Read-Across and Category Formationp408-445ByN. Jeliazkova;N. JeliazkovaInstitute for Parallel Processing, Bulgarian Academy of ScienceSofiaBulgariaSearch for other works by this author on:J. Jaworska;J. JaworskaProcter & Gamble, Modeling & Simulation, Biological Systems, Brussels Innovation CenterBelgiumSearch for other works by this author on:A. P. WorthA. P. WorthEuropean Commission Joint Research Centre, Institute for Health and Consumer ProtectionIspra 21027 (VA)ItalySearch for other works by this author on:
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Chapter 18: Biological Read-Across: Mechanistically-Based Species–Species and Endpoint–Endpoint Extrapolationsp446-477ByM. T. D. CroninM. T. D. CroninSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom StreetLiverpool L3 3AFUKSearch for other works by this author on:
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Chapter 19: Expert Systems for Toxicity Predictionp478-507ByJ. C. DeardenJ. C. DeardenSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom StreetLiverpool L3 3AFUKSearch for other works by this author on:
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Chapter 20: Exposure Modelling for Risk Assessmentp508-530ByJ. MarquartJ. MarquartTNO Quality of LifeFood and Chemical Risk Analysis, Utrechtseweg 48PO Box 3603700 AJ ZeistThe NetherlandsSearch for other works by this author on:
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Chapter 21: Toxicokinetic Considerations in Predicting Toxicityp531-557ByJ. C. MaddenJ. C. MaddenSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom StreetLiverpool L3 3AFUKSearch for other works by this author on:
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Chapter 22: Multiple Test In Silico Weight-of-Evidence for Toxicological Endpointsp558-583ByT. Aldenberg;T. AldenbergRIVMAntonie van Leeuwenhoeklaan 9Bilthoven NL-3721MAThe NetherlandsSearch for other works by this author on:J. S. JaworskaJ. S. JaworskaProcter and GambleTemselaan 100, 1853 Strombeek-BeverBrusselsBelgiumSearch for other works by this author on:
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Chapter 23: Integrated Testing Strategies and the Prediction of Toxic Hazardp584-605ByM. BallsM. BallsFund for the Replacement of Animals in Medical Experiments (FRAME)Russell&Burch House, 96–98 North Sherwood StreetNottingham NG1 4EEUKSearch for other works by this author on:
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Chapter 24: Using In Silico Toxicity Predictions: Case Studies for Skin Sensitisationp606-623ByJ. C. MaddenJ. C. MaddenSchool of Pharmacy and Chemistry, Liverpool John Moores UniversityByrom StreetLiverpool L3 3AFUKSearch for other works by this author on:
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