Ribozymes and RNA Catalysis
The discovery that RNA could act as a macromolecular catalyst in the cell, signified a paradigm shift in molecular biology. Ribozymes and RNA Catalysis takes the reader through the origins of catalysis in RNA and necessarily includes significant discussion of structure and folding. The main focus of the book concerns chemical mechanism with extensive comment on how, despite the importance of RNA catalysis in the cell, its origins are still poorly understood and often controversial. The reader is given an outline of the important role of RNA catalysis in many aspects of cell function, including RNA processing and translation. There has been a significant coming together in the field of RNA in recent years and this book offers a compelling review of the whole field to date. Written by leading experts in their field, who in turn review the structural and mechanistic data for all known ribozymes this book is well suited for undergraduates, postgraduates and researchers in catalytic chemistry as well as those in related fields who require a unique overview of the subject.
M. V. Rodnina, J. W. Szostak, and B. L. Golden, Ribozymes and RNA Catalysis, The Royal Society of Chemistry, 2007.
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Table of contents
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Chapter 1: Ribozymes and RNA Catalysis: Introduction and Primerp1-10ByDavid M.J. Lilley;David M.J. LilleyCancer Research UK Nucleic Acid Structure Research GroupMSI/WTB ComplexThe University of Dundee, Dow StreetDundee DD1 5EHUKSearch for other works by this author on:Fritz EcksteinFritz EcksteinMax-Planck-Institut Für Experimentelle Medizin, Hermann-Rein-Str. 3Göttingen D-37075GermanySearch for other works by this author on:
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Chapter 2: Proton Transfer in Ribozyme Catalysisp11-36ByPhilip C. BevilacquaPhilip C. BevilacquaThe Pennsylvania State UniversityDepartment of ChemistryUniversity ParkPennsylvania 16802USASearch for other works by this author on:
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Chapter 3: Finding the Hammerhead Ribozyme Active Sitep37-47ByDominic Lambert;Dominic LambertDepartment of Microbiology and Molecular Genetics, University of Vermont95 Carrigan Drive220B Stafford HallBurlingtonVermont 05405USASearch for other works by this author on:John M. BurkeJohn M. BurkeDepartment of Microbiology and Molecular Genetics, University of Vermont95 Carrigan Drive220B Stafford HallBurlingtonVermont 05405USASearch for other works by this author on:
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Chapter 4: Hammerhead Ribozyme Crystal Structures and Catalysisp48-65ByWilliam G. ScottWilliam G. ScottCenter for the Molecular Biology of RNA, University of CaliforniaSanta CruzCA 95064USASearch for other works by this author on:
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Chapter 5: The Hairpin and Varkud Satellite Ribozymesp66-91ByDavid M.J. LilleyDavid M.J. LilleyCancer Research UK Nucleic Acid Structure Research GroupMSI/WTB ComplexThe University of DundeeDow StreetDundee DD1 5EHUKSearch for other works by this author on:
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Chapter 6: Catalytic Mechanism of the HDV Ribozymep92-122BySelene Koo;Selene KooDepartment of Biochemistry and Molecular Biology, The University of Chicago929 East 57th StreetChicagoIllinois 60637USAThese authors contributed equally to this workSearch for other works by this author on:Thaddeus Novak;Thaddeus NovakDepartment of Biochemistry and Molecular Biology, The University of Chicago929 East 57th StreetChicagoIllinois 60637USAThese authors contributed equally to this workSearch for other works by this author on:Joseph A. PiccirilliJoseph A. PiccirilliDepartment of Biochemistry and Molecular Biology, The University of Chicago929 East 57th StreetChicagoIllinois 60637USAHoward Hughes Medical Institute, Department of Chemistry, The University of Chicago929 East 57th StreetChicagoIllinois 60637USASearch for other works by this author on:
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Chapter 7: Mammalian Self-Cleaving Ribozymesp123-133ByAndrej Lupták;Andrej LuptákHoward Hughes Medical InstituteCenter for Computational and Integrative Biologyand Department of Molecular BiologyMassachusetts General Hospital185 Cambridge StreetBostonMA 02114USASearch for other works by this author on:Jack W. SzostakJack W. SzostakHoward Hughes Medical InstituteCenter for Computational and Integrative Biologyand Department of Molecular BiologyMassachusetts General Hospital185 Cambridge StreetBostonMA 02114USASearch for other works by this author on:
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Chapter 8: The Structure and Action of glmS Ribozymesp134-152ByKristian H. Link;Kristian H. LinkHoward Hughes Medical Institute, Yale UniversityNew HavenConnecticut 06520-8103USASearch for other works by this author on:Ronald R. BreakerRonald R. BreakerHoward Hughes Medical Institute, Yale UniversityNew HavenConnecticut 06520-8103USADepartment of Molecular, Cellular and Developmental Biology, Yale UniversityNew HavenConnecticut 06520-8103USADepartment of Molecular Biophysics and Biochemistry, Yale UniversityNew HavenConnecticut 06520-8103USASearch for other works by this author on:
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Chapter 9: A Structural Analysis of Ribonuclease Pp153-177BySteven M. Marquez;Steven M. MarquezDepartment of Molecular, Cellular and Developmental Biology, University of Colorado at BoulderBoulderColorado 80309-0347USASearch for other works by this author on:Donald Evans;Donald EvansDepartment of Molecular, Cellular and Developmental Biology, University of Colorado at BoulderBoulderColorado 80309-0347USASearch for other works by this author on:Alexei V. Kazantsev;Alexei V. KazantsevDepartment of Molecular, Cellular and Developmental Biology, University of Colorado at BoulderBoulderColorado 80309-0347USASearch for other works by this author on:Norman R. PaceNorman R. PaceDepartment of Molecular, Cellular and Developmental Biology, University of Colorado at BoulderBoulderColorado 80309-0347USASearch for other works by this author on:
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Chapter 10: Group I Introns: Biochemical and Crystallographic Characterization of the Active Site Structurep178-200ByBarbara L. GoldenBarbara L. GoldenDepartment of Biochemistry, Purdue University175 South University StreetWest LafayetteIN 47907-2063USASearch for other works by this author on:
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Chapter 11: Group II Introns: Catalysts for Splicing, Genomic Change and Evolutionp201-228ByAnna Marie PyleAnna Marie PyleDepartment of Molecular Biophysics and Biochemistry, Yale UniversityHoward Hughes Medical InstituteNew HavenCTSearch for other works by this author on:
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Chapter 12: The GIR1 Branching Ribozymep229-252ByHenrik Nielsen;Henrik NielsenDepartment of Cellular and Molecular Medicine, The Panum Institute, University of CopenhagenCopenhagenDK-2200NDenmarkDepartment of Molecular Biotechnology, Institute of Medical Biology, University of TromsøTromsøNorwaySearch for other works by this author on:Bertrand Beckert;Bertrand BeckertInstitut de Biologie Moléculaire et CellulaireCentre National de le Recherche ScientifiqueUniversité PasteurStrasbourgFranceSearch for other works by this author on:Benoit Masquida;Benoit MasquidaInstitut de Biologie Moléculaire et CellulaireCentre National de le Recherche ScientifiqueUniversité PasteurStrasbourgFranceSearch for other works by this author on:Steinar D. JohansenSteinar D. JohansenDepartment of Molecular Biotechnology, Institute of Medical Biology, University of TromsøTromsøNorwaySearch for other works by this author on:
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Chapter 13: Is the Spliceosome a Ribozyme?p253-269ByDipali G. Sashital;Dipali G. SashitalDepartment of Biochemistry, University of Wisconsin-Madison433 Babcock DriveMadisonWisconsin53706USASearch for other works by this author on:Samuel E. ButcherSamuel E. ButcherDepartment of Biochemistry, University of Wisconsin-Madison433 Babcock DriveMadisonWisconsin53706USASearch for other works by this author on:
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Chapter 14: Peptidyl Transferase Mechanism: The Ribosome as a Ribozymep270-294ByMarina V. RodninaMarina V. RodninaInstitute of Physical Biochemistry, University of Witten/HerdeckeWittenGermanySearch for other works by this author on:
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Chapter 15: Folding Mechanisms of Group I Ribozymesp295-314BySarah A. Woodson;Sarah A. WoodsonT.C. Jenkins Department of Biophysics, Johns Hopkins University3400 N. Charles St.BaltimoreMD 21218-2685USASearch for other works by this author on:Prashanth RanganPrashanth RanganSkirball Institute of Biomolecular MedicineNew York University Medical SchoolNew YorkNY 10016USASearch for other works by this author on:
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