Toxicogenomics in Predictive Carcinogenicity
Research over the past decade has demonstrated that TGx methods of various types can be used to discriminate modes of mutagenesis as a function of dose. TGx can quickly inform safety evaluation regarding potential mechanisms of conventional outcomes and can provide essential dose-response information. This can then be used to ascertain the sequence of key events in a putative mode of action as may apply in quantitative cancer risk assessment. With the increasing complexity of research in mode of action investigations it is important to gain a better understand of approaches to data integration and health risk assessment. Furthermore, it is essential to consider how novel test systems and newer methods and approaches may be used in future to gain a better understanding of mechanisms.
Toxicogenomics in Predictive Carcinogenicity describes toxicogenomics methods in predictive carcinogenicity testing, mode of action and safety evaluation, and cancer risk assessment. It illustrates these methods using case studies that have yielded significant new information on compounds and classes of compounds that have proven difficult to evaluate using conventional methods alone. This book additionally covers current and potential toxicogenomic research using stem cells as well as new bioinformatics methods for drug discovery and environmental toxicology.
This publication is an indispensable tool for postgraduates, academics and industrialists working in biochemistry, genomics, carcinogenesis, pathology, pharmaceuticals, food technology, bioinformatics, risk assessment and environmental toxicology.
Toxicogenomics in Predictive Carcinogenicity, The Royal Society of Chemistry, 2016.
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Table of contents
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Chapter 1: Introduction to Predictive Toxicogenomics for Carcinogenicityp1-38ByMichael D. WatersMichael D. WatersIntegrated Laboratory Systems (ILS), Inc.PO Box 13507Research Triangle ParkNC 27709USA[email protected]Search for other works by this author on:
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Chapter 2: Genomic Biomarkers in Cell-based Drug Screeningp39-75ByHeng-Hong LiHeng-Hong LiGeorgetown University, Department of Biochemistry, Molecular and Cellular Biology3970 Reservoir RdWashingtonDC20007USA[email protected]Search for other works by this author on:
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Chapter 3: Toxicogenomics In vitro: Gene Expression Signatures for Differentiating Genotoxic Mechanismsp76-112ByJulie K. Buick;Julie K. BuickMechanistic Studies Division, Environmental Health Science and Research Bureau, Environmental and Radiation Health Sciences Directorate, Healthy Environments and Consumer Safety Branch, Health Canada50 Colombine DrivewayPL0803AOttawaOntarioK1A 0K9Canada[email protected][email protected]Search for other works by this author on:Carole L. YaukCarole L. YaukMechanistic Studies Division, Environmental Health Science and Research Bureau, Environmental and Radiation Health Sciences Directorate, Healthy Environments and Consumer Safety Branch, Health Canada50 Colombine DrivewayPL0803AOttawaOntarioK1A 0K9Canada[email protected][email protected]Search for other works by this author on:
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Chapter 4: In vivo Signatures of Genotoxic and Non-genotoxic Chemicalsp113-153ByScott S. AuerbachScott S. AuerbachToxicoinformatic Group, Biomolecular Screening Branch, Division of the National Toxicology Program, National Institute of Environmental Health SciencesPO Box 12233MD K2-17Research Triangle ParkNC 27709USA[email protected]Search for other works by this author on:
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Chapter 5: Transcriptomic Dose–Response Analysis for Mode of Action and Risk Assessmentp154-184ByRussell S. Thomas;Russell S. ThomasNational Center for Computational Toxicology, U.S. Environmental Protection Agency109 T.W. Alexander DriveRoom D110DMail Code: D143-02Research Triangle ParkNC 27711USASearch for other works by this author on:Michael D. WatersMichael D. WatersIntegrated Laboratory Systems (ILS), Inc.PO Box 13501Research Triangle ParkNC 27709USA[email protected]Search for other works by this author on:
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Chapter 6: Using Transcriptomics to Evaluate Thresholds in Genotoxicity Dose–Responsep185-208ByPatrick D. McMullen;Patrick D. McMullenThe Hamner Institutes for Health SciencesResearch Triangle ParkNCUSASearch for other works by this author on:Salil Pendse;Salil PendseThe Hamner Institutes for Health SciencesResearch Triangle ParkNCUSASearch for other works by this author on:Yeyejide Adeleye;Yeyejide AdeleyeUnilever, Safety and Environmental Assurance CentreUKSearch for other works by this author on:Paul L. Carmichael;Paul L. CarmichaelUnilever, Safety and Environmental Assurance CentreUKSearch for other works by this author on:Melvin E. Andersen;Melvin E. AndersenThe Hamner Institutes for Health SciencesResearch Triangle ParkNCUSASearch for other works by this author on:Rebecca A. ClewellRebecca A. ClewellSearch for other works by this author on:
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Chapter 7: Dissecting Modes of Action of Non-genotoxic Carcinogensp209-235ByMirjam M. Schaap;Mirjam M. SchaapCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Department of Toxicogenetics, Leiden University Medical CenterLeidenThe NetherlandsSearch for other works by this author on:Jan van Benthem;Jan van BenthemCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Search for other works by this author on:Miriam N. Jacobs;Miriam N. JacobsCentre for Radiation, Chemical and Environmental Hazards Centre, Public Health EnglandUKSearch for other works by this author on:Annamaria Colacci;Annamaria ColacciCenter for Environmental Toxicology, Environmental Protection and Health Prevention AgencyBolognaItalySearch for other works by this author on:Anne S. Kienhuis;Anne S. KienhuisCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Search for other works by this author on:Harry van Steeg;Harry van SteegCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Department of Toxicogenetics, Leiden University Medical CenterLeidenThe NetherlandsSearch for other works by this author on:Mirjam LuijtenMirjam LuijtenCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Department of Toxicogenetics, Leiden University Medical CenterLeidenThe NetherlandsSearch for other works by this author on:
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Chapter 8: Human Embryonic Stem Cells as Biological Models to Examine the Impact of Xenobiotics on the Genome and Epigenomep236-246ByLeslie RecioLeslie RecioIntegrated Laboratory Systems (ILS), Inc.PO Box 13507Research Triangle ParkNC 27709USA[email protected]Search for other works by this author on:
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Chapter 9: Novel Data Streams in the Assessment of Mutagenicity and Carcinogenicity: Implications for Cancer Hazard Assessmentp247-279ByKathryn Z. Guyton;Kathryn Z. GuytonMonographs Section, International Agency for Research on Cancer150, cours Albert Thomas69372 Lyon Cedex 08France[email protected]Search for other works by this author on:Michael D. WatersMichael D. WatersIntegrated Laboratory Systems (ILS), Inc.PO Box 13501Research Triangle ParkNC 27709USASearch for other works by this author on:
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Chapter 10: Conazoles and Cancer: A Reviewp280-351ByStephen NesnowStephen NesnowSearch for other works by this author on:
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Chapter 11: Application of Transcriptomics in Exposed Human Populations: Benzene as an Examplep352-389ByCliona M. McHale;Cliona M. McHaleDivision of Environmental Health Sciences, Genes and Environment Laboratory, School of Public Health, University of CaliforniaBerkeleyCaliforniaUSA[email protected]Search for other works by this author on:Martyn T. Smith;Martyn T. SmithDivision of Environmental Health Sciences, Genes and Environment Laboratory, School of Public Health, University of CaliforniaBerkeleyCaliforniaUSA[email protected]Search for other works by this author on:Luoping ZhangLuoping ZhangDivision of Environmental Health Sciences, Genes and Environment Laboratory, School of Public Health, University of CaliforniaBerkeleyCaliforniaUSA[email protected]Search for other works by this author on:
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Chapter 12: Toxicogenomics Case Study: Furanp390-422ByA. Francina Webster;A. Francina WebsterDepartment of Biology, Carleton University1125 Colonel By DriveOttawaONCanadaEnvironmental Health Science and Research Bureau, Health Canada, Tunney's Pasture50 Colombine DrivewayOttawaONCanada[email protected]Search for other works by this author on:Iain B. Lambert;Iain B. LambertDepartment of Biology, Carleton University1125 Colonel By DriveOttawaONCanadaSearch for other works by this author on:Carole L. YaukCarole L. YaukEnvironmental Health Science and Research Bureau, Health Canada, Tunney's Pasture50 Colombine DrivewayOttawaONCanada[email protected]Search for other works by this author on:
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Chapter 13: The Parallelogram Approach to Assess Human Relevance of Toxicogenomics-derived Toxicity Pathways in Human Health Risk Assessmentp423-441ByAnne S. Kienhuis;Anne S. KienhuisCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Search for other works by this author on:Wim C. Mennes;Wim C. MennesCentre for Nutrition, Prevention and Health Services, National Institute for Public Health and the Environment (RIVM)BilthovenThe NetherlandsSearch for other works by this author on:Marja Driessen;Marja DriessenCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Search for other works by this author on:Leo T. M. van der Ven;Leo T. M. van der VenCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Search for other works by this author on:Jan van Benthem;Jan van BenthemCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Search for other works by this author on:Mirjam LuijtenMirjam LuijtenCentre for Health Protection, National Institute for Public Health and the Environment (RIVM)BilthovenThe Netherlands[email protected]Search for other works by this author on:
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Chapter 14: Bioinformatics of Genomics in the Assessment of Cancerp442-483ByPierre R. BushelPierre R. BushelBiostatistics and Computational Biology Branch, National Institute of Environmental Health SciencesP.O. Box 12233RTPNorth Carolina27709USA[email protected]Search for other works by this author on:
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