Processing Metabolomics and Proteomics Data with Open Software: A Practical Guide
CHAPTER 13: Trans-Proteomic Pipeline for the Identification, Validation, and Quantification of Proteins1
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Published:16 Mar 2020
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Special Collection: 2020 ebook collection
Eric W. Deutsch, Luis Mendoza, David D. Shteynberg, Zhi Sun, Michael H. Hoopmann, Robert L. Moritz, 2020. "Trans-Proteomic Pipeline for the Identification, Validation, and Quantification of Proteins1", Processing Metabolomics and Proteomics Data with Open Software: A Practical Guide, Robert Winkler
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The Trans-Proteomic Pipeline (TPP) is a free and open-source suite of software analysis tools that enable the complete processing of mass spectrometry proteomics data. The tools interoperate via a set of metadata-rich common data formats, and can be used on different operating systems. It scales from use on a single computer with a graphical user interface to thousands of cores on cloud computing platforms or container-based deployments. In this chapter we provide a brief overview of many of the TPP tools, highlighting a set of publicly available tutorials that can help a user become familiar with the various tools in a classroom setting or independently.