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ADI

Acceptable Daily Intake

AFLP

Amplified fragment length polymorphism

AIEC

Adherent invasive Escherichia coli

ALOA

Agar Listeria according to Ottoviani and Agosti

ALOP

Appropriate level of protection

AOAC

Association of Official Agricultural Chemists International

ARfD

Acute reference doses

ASP

Amnesic shellfish poisoning

BHA

Butylated hydroxyanisole

BHT

Butylated hydroxytoluene

BoNT

Clostridium botulinum neurotoxin

BP

Baird-Parker medium

BRC

British Retail Consortium

BSE

Bovine spongiform encephalopathy

cAMP

Cyclic adenosine monophosphate

CAMP

Christie, Atkins and Munch-Peterson test

CAP

Controlled atmosphere storage and packaging

CCP

Critical control point

CDSC

Communicable Disease Surveillance Centre (Wales)

CFs

Colonization factors

cgMLST

Core genome multi-locus sequence typing

CJD

Creutzfeldt–Jacob disease

CIP

Cleaning-in-place

CL

Confidence limits

CTC

Cyanoditolyl tetrazolium chloride

CTS

Check and Trace Salmonella

CPA

Clostridium perfringens alpha toxin

CPE

Clostridium perfringens enterotoxin

DAEC

Diffusely adherent Escherichia coli

DALY

Disability-adjusted life year

DEFT

Direct epifluorescent microscope technique

DEFRA

Department for Environment Food and Rural Affairs

DFD

Dark firm and dry

DIVA

Detects infected animals not vaccinated

DNA

Deoxyribonucleic acid

DON

Deoxynivalenol

DSP

Diarrhoeal shellfish poisoning

EAEC (or EaggEC)

Enteroaggregative Escherichia coli

EAST

Enteroaggregative Escherichia coli heat-stable enterotoxin

ECDC

European Centre for Disease Prevention and Control

EDTA

Ethylenediaminetetraacetic acid

EHEC

Enterohaemorrhagic Escherichia coli

EIEC

Enteroinvasive Escherichia coli

ELISA

Enzyme-linked immunosorbent assay

EMA

Ethidium monoazide

EPEC

Enteropathogenic Escherichia coli

ETEC

Enterotoxigenic Escherichia coli

EM

Electromagnetic

EMP

Emden–Meyerhof–Parnas metabolic pathway

ERH

Equilibrium relative humidity

EU

European Union

FAO

Food and Agriculture Organization

FlDA

Fluorescein diacetate

FDEM

Foodborne Disease Estimation Model

FFA

Free fatty acids

FSO

Food safety objective

FWD-Net

European Food- and Waterborne Disease Network

GBS

Guillain–Barré syndrome

GFSI

Global Food Safety Initiative

GMP

Good manufacturing practice

GRAS

Generally recognised as safe

GZ

Gesammte Konzentration (German), sum of the concentration of ethanol and acetic acid

HACCP

Hazard analysis critical control points

HBL

Haemolytic enterotoxin

HCA

High care area

HECV

Human enteric coronavirus

HGMF

Hydrophobic grid membrane filter

HPA

Health Protection Agency

HPLV

High pressure low volume

HTST

High temperature/short time

HUS

Haemolytic uraemic syndrome

IBB

Inositol/brilliant green/bile salts medium

ICMSF

International Commission on Microbiological Specifications for Foods

IID

Infectious intestinal disease

IMF

Intermediate moisture food

IMViC

Indole/methyl red/acetoin/citrate tests

INT

2-(p-Iodophenyl)-3-(p-nitrophenyl)-5-phenyltetrazolium chloride

ISO

International Standards Organization

ITS

Internal transcribed spacer

LAB

Lactic acid bacteria

LA-MRSA

Livestock-associated methicillin-resistant Staphylococcus aureus

LC–MS

Liquid chromatography–mass spectrometry

LEE

Locus of enterocyte effacement

LPS

Lipopolysaccharide

LPHV

Low pressure/high volume

LT

Heat-labile toxins

LTH

Low temperature holding

MALDI-TOF MS

Matrix-associated laser desorption ionization time-of-flight mass spectrometry

MAP

Modified-atmosphere packaging

MAPS

Microwave-assisted pasteurization system

MATS

Microwave-assisted sterilization system

MMB

Milk Marketing Board

MLST

Multi-locus sequence typing

MPN

Most probable number

MRSA

Methicillin-resistant Staphylococcus aureus

MUG

4-Methylumbelliferyl-β-d-glucuronide

MW

Molecular weight

NAD

Nicotinamide adenine dinucleotide, where NADH is the reduced form of NAD

NCIB

National Centre for Biological Information

NGS

Next-generation sequencing

NHE

Non-haemolytic enterotoxin

NoV

Norovirus

NSLAB

Non-starter lactic acid bacteria

NSP

Neurotoxin shellfish poisoning

OC

Operating characteristic

OECD

Organisation for Economic Co-operation and Development

OPSP

Oleandomycin/polymyxin/sulfadiazine/perfringens medium

PCR

Polymerase chain reaction

PEF

Pulsed electric fields

PEMBA

Polymyxin pyruvate egg-yolk mannitol–bromothymol blue agar

PEP

Phosphoenolpyruvate

PFGE

Pulsed-field gel electrophoresis

PHE

Public Health England

PI

Propidium iodide

PIF

Powdered infant formula

PMA

Propidium monoazide

PMSC

Premature stop codons

PO

Performance objective

PQQ

Pyrroloquinolone quinone

PSE

Pale, soft and exudative

PSP

Paralytic shellfish poisoning

PTS

Phosphoenolpyruvate-dependent phosphotransferase system

PVDC

Polyvinylidene chloride

QMRA

Quantitative microbiological risk assessment

qPCR/vPCR

Quantitative/viable polymerase chain reaction

QPS

Qualified presumption of safety

QUATS

Quaternary ammonium compounds

RASFF

Rapid alert system for food and feed

RNA

Ribonucleic acid

rRNA

Ribosomal ribonucleic acid

RTE

Ready-to-eat

RFLP

Restriction fragment length polymorphism

RT-PCR

Reverse transcriptase-polymerase chain reaction

RV

Rappaport–Vassiliadis medium

SCP

Single-cell protein

SE

Spongiform encephalopathy

SNAP

Synaptosome-associated protein

SNF

Solids non-fat

SNP

Single nucleotide polymorphism

SOD

Superoxide dismutase

SRSVs

Small round structured viruses

ST

Heat-stable toxins

Stx

Shiga toxin

STEC

Shiga toxin-producing Escherichia coli

TB

Tuberculosis

TBC

Total bacterial count

TCBS

Thiosulfate/citrate/bile salt/sucrose medium

TDH

Thermostable, extracellular haemolysin

TMA

Trimethylamine

TMAO

Trimethylamine-N-oxide

TRH

Thermostable, extracellular haemolysin-related haemolysin

TSC

Tryptose/sulfite/cycloserine medium

TTP

Thrombocytopaenic purpura

UHT

Ultra high temperature

UK FSA

UK Food Standards Agency

USDA

United States Department of Agriculture

US FDA

US Food and Drug Administration

UV

Ultraviolet

vCJD

New variant Creutzfeldt–Jacob disease

VP

Voges–Proskauer test

VTEC

Verocytotoxigenic (or verotoxin-producing) Escherichia coli

WGS

Whole-genome sequencing

wgMLST

Whole-genome multi-locus sequence typing

WHO

World Health Organization

YLD

Years of life with disability

YLL

Years of life lost

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